analyse_cnv: A Function Analyses CNV data

Description Usage Arguments

Description

This function analyses methylome data.

Usage

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analyse_cnv(gene, cnv_data, cnv_platform, cols, PLOT = FALSE, up_str = 5000,
  dwn_str = 5000, method = NULL, FULL = FALSE)

Arguments

gene

A vector describing the gene (line of a bed file).

cnv_data

A matrix of CN values.

cnv_platform

A data frame describing probe positions.

cols

A color vectors indexed by by samples names.

PLOT

A boolean defining if graphical output must be dispayed on the graphical output.

up_str

An integer specifying up stream size (in bp).

dwn_str

An integer specifying down stream size (in bp).

method

A function used to extract CN score on each region

FULL

A boolean defining if full analysis must be performed.


fchuffar/methmybeachup documentation built on May 16, 2019, 12:07 p.m.