This function analyses methylome data.
1 2 | analyse_cnv(gene, cnv_data, cnv_platform, cols, PLOT = FALSE, up_str = 5000,
dwn_str = 5000, method = NULL, FULL = FALSE)
|
gene |
A vector describing the gene (line of a bed file). |
cnv_data |
A matrix of CN values. |
cnv_platform |
A data frame describing probe positions. |
cols |
A color vectors indexed by by samples names. |
PLOT |
A boolean defining if graphical output must be dispayed on the graphical output. |
up_str |
An integer specifying up stream size (in bp). |
dwn_str |
An integer specifying down stream size (in bp). |
method |
A function used to extract CN score on each region |
FULL |
A boolean defining if full analysis must be performed. |
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