Man pages for fchuffar/ptlmapper
Useful genetic tool allowing to discriminate individuals by comparing the distribution of their phenotype and to map the genetic loci responsible for specific distributions
| build_kd_matrix | A Function That Builds Kantorivitch Distance Matrix |
| build_mmoments_matrix | A Function That Builds Multivariate Moment Matrix |
| build_pheno_hists | A Function That Builds Histograms From Single Cell Data |
| check_marker_allele_prop | A Function That Checks Proportion of Allele for each Marker |
| extract_axis_info | A Function That Extracts Axis Information from a... |
| get_best_markers_rptl | A Function That Returns Best Markers Obtained in the PTL... |
| get_best_markers_rqtl | A Function That Returns Best Markers Obtained in the... |
| get_wilks_score | A Function That Compute the Wilks Score |
| kantorovich | A Function That Computes Kantorovich Distance |
| kantorovich2D | A Function That Computes Kantorovich Distance between two 2D... |
| marker2col | A Function That Converts Marker Names Into Color Index |
| plot_can | A Function That Plots the Linear Disciminant Analysis |
| plot_dist | A Function Distribution of the Phenotypes |
| plot_empirical_test | A Function That Plots Empirical P-Values |
| plot_noise | A Function That Plots Noise |
| plot_orth_trans | A Function That Plots Orthogonal Transformation |
| plot_rqtl | A Function That Plots Encapsulated RQTL Outputs |
| plot_wilks | A Function That Plots Encapsulated Wilks Scores |
| plot_wilks_k | A Function That Plots Encapsulated Wilks Scores for... |
| plot_wilks_mm | A Function That Plots Encapsulated Wilks Scores for... |
| preprocess_data_rqtl | A Function That Preprocesses Genotypes and Phenotypes of... |
| preprocess_genodata | A Function That Preprocesses Genotype of Individuals |
| preprocess_phenodata_rqtl | A Function That Preprocesses Phenotypes of Individuals for R... |
| ptl_mapping | A Workflow That Maps PTLs, QTLs, Returns involved Objects,... |
| ptl_scan | A Function That Scans Genome to Detect PTLs |
| rqtl_launch | A Function That Scans Genome to Detect QTLs (based on R... |
| zscore | A Function That Computes Z-Score |
