Man pages for federicogiorgi/vulcan
VirtUaL ChIP-Seq data Analysis using Networks
| average_fragment_length | Define the average fragment length |
| corr2p | Convert correlation coefficient to p-value |
| densityauc | densityauc - Calculate the AUC of a density object |
| dpareto | Probability density of Pareto distributions |
| fisherp | Fisher integration of p-values |
| gsea | GSEA |
| kmgformat | kmgformat - Nice Formatting of Numbers |
| null_gsea | Calculate Null Distribution for GSEA |
| p2corr | Convert p-value to correlation coefficient |
| p2z | p2z |
| pareto.fit | Estimate parameters of Pareto distribution |
| plot_gsea | Plot GSEA results |
| ppareto | Cumulative distribution function of the Pareto distributions... |
| rea | REA: Rank EnrichmeNt Analysis |
| slice | Slice |
| stouffer | Stouffer integration of Z scores |
| textplot2 | textplot2 - An x y plot of non-overlapping text |
| val2col | Convert a numeric vector into colors |
| vulcan | VULCAN - VirtUaL Chipseq data Analysis using Networks |
| vulcan.annotate | Function to annotate peaks for VULCAN analysis |
| vulcan.import | Function to import BAM files |
| vulcan.normalize | Function to normalize promoter peak data |
| vulcan.pathways | Function to calculate pathway enrichment over a ChIP-Seq... |
| wstouffer | Weighted Stouffer integration of Z scores |
| z2p | z2p |
