Files in federicomarini/pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
.Rbuildignore
.github/workflows/R-CMD-check.yaml
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/correlatePCs.R
R/deprecated.R
R/distro_expr.R
R/genespca.R
R/get_annotation.R
R/hi_loadings.R
R/makeds.R
R/pair_corr.R
R/pca2go.R
R/pcaExplorer-pkg.R
R/pcaExplorer.R
R/pcaplot.R
R/profile_explore.R
R/zzz.R
README.md
_pkgdown.yml
inst/CITATION
inst/extdata/about.md
inst/extdata/datainput.md
inst/extdata/instructions.md
inst/extdata/instructions_unr.md
inst/extdata/reportTemplate.Rmd
inst/www/help_dataformats.png
inst/www/pcaExplorer.png
man/correlatePCs.Rd
man/deprecated.Rd
man/distro_expr.Rd
man/figures/pcaExplorer.png
man/geneprofiler.Rd
man/genespca.Rd
man/get_annotation.Rd
man/get_annotation_orgdb.Rd
man/hi_loadings.Rd
man/limmaquickpca2go.Rd
man/makeExampleDESeqDataSet_multifac.Rd
man/pair_corr.Rd
man/pca2go.Rd
man/pcaExplorer-pkg.Rd
man/pcaExplorer.Rd
man/pcaplot.Rd
man/pcaplot3d.Rd
man/pcascree.Rd
man/plotPCcorrs.Rd
man/topGOtable.Rd
tests/testthat.R
tests/testthat/setuptests_pcaExplorer.R
tests/testthat/test_annotations.R
tests/testthat/test_correlatePCs.R
tests/testthat/test_hiloadings.R
tests/testthat/test_makeDS.R
tests/testthat/test_moreplots.R
tests/testthat/test_pca2go.R
tests/testthat/test_pcagenes.R
tests/testthat/test_pcasamples.R
tests/testthat/test_shiny.R
vignettes/newsnap_01_upload.png
vignettes/newsnap_02_instructions.png
vignettes/newsnap_03_countstable.png
vignettes/newsnap_04_overview.png
vignettes/newsnap_05_samples.png
vignettes/newsnap_06_genes.png
vignettes/newsnap_07_finder.png
vignettes/newsnap_08_pca2go.png
vignettes/newsnap_09_multifac.png
vignettes/newsnap_10_editor.png
vignettes/newsnap_11_about.png
vignettes/pcaExplorer.Rmd
vignettes/unr_00_demo_loaded.png
vignettes/unr_01_splom.png
vignettes/unr_02_sts_heatmap.png
vignettes/unr_03_summary_counts.png
vignettes/unr_04a_samplespca.png
vignettes/unr_04b_samples_dex.png
vignettes/unr_05_loadings.png
vignettes/unr_06a_genefinder_dusp1.png
vignettes/unr_06b_genefinder_per1.png
vignettes/unr_06c_genefinder_ddx3y.png
vignettes/unr_06c_genefinder_ddx3y_dex.png
vignettes/unr_07_genespca.png
vignettes/unr_08_pca2go_topgo.png
vignettes/unr_90_exitsave.png
vignettes/unr_99_editreport.png
vignettes/upandrunning.Rmd
