geneprofiler: Extract and plot the expression profile of genes

In federicomarini/pcaExplorer: Interactive Visualization of RNA-seq Data Using a Principal Components Approach

Extract and plot the expression profile of genes

Description

Extract and plot the expression profile of genes

Usage

geneprofiler(se, genelist = NULL, intgroup = "condition", plotZ = FALSE)

Arguments

se	A DESeqDataSet() object, or a DESeqTransform() object.
genelist	An array of characters, including the names of the genes of interest of which the profile is to be plotted
intgroup	A factor, needs to be in the colnames of colData(se)
plotZ	Logical, whether to plot the scaled expression values. Defaults to FALSE

Value

A plot of the expression profile for the genes

Examples

dds <- makeExampleDESeqDataSet_multifac(betaSD_condition = 3, betaSD_tissue = 1)
rlt <- DESeq2::rlogTransformation(dds)
geneprofiler(rlt, paste0("gene", sample(1:1000, 20)))
geneprofiler(rlt, paste0("gene", sample(1:1000, 20)), plotZ = TRUE)

federicomarini/pcaExplorer documentation built on Sept. 29, 2024, 9:31 p.m.