Man pages for federicomarini/pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
| correlatePCs | Principal components (cor)relation with experimental... |
| deprecated | Deprecated functions in pcaExplorer |
| distro_expr | Plot distribution of expression values |
| geneprofiler | Extract and plot the expression profile of genes |
| genespca | Principal components analysis on the genes |
| get_annotation | Get an annotation data frame from biomaRt |
| get_annotation_orgdb | Get an annotation data frame from org db packages |
| hi_loadings | Extract genes with highest loadings |
| limmaquickpca2go | Functional interpretation of the principal components, based... |
| makeExampleDESeqDataSet_multifac | Make a simulated DESeqDataSet for two or more experimental... |
| pair_corr | Pairwise scatter and correlation plot of counts |
| pca2go | Functional interpretation of the principal components |
| pcaExplorer | Explore a dataset from a PCA perspective |
| pcaExplorer-pkg | pcaExplorer: analyzing time-lapse microscopy imaging, from... |
| pcaplot | Sample PCA plot for transformed data |
| pcaplot3d | Sample PCA plot for transformed data |
| pcascree | Scree plot of the PCA on the samples |
| plotPCcorrs | Plot significance of (cor)relations of covariates VS... |
| topGOtable | Extract functional terms enriched in the DE genes, based on... |
