Files in federicomarini/quantiseqr
Quantification of the Tumor Immune contexture from RNA-seq data
.github/workflows/R-CMD-check.yaml
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/quantiseqr-pkg.R
R/quantiseqr.R
R/quantiseqr_helpers.R
README.md
data/dataset_racle.rda
data/ti_quant_sim1700mixtures.RData
inst/extdata/HGNC_genenames_20170418.txt.gz
inst/extdata/SRP066571runtable.txt
inst/extdata/TIL10_TCGA_aberrant_immune_genes.txt
inst/extdata/TIL10_mRNA_scaling.txt
inst/extdata/TIL10_rmgenes.txt
inst/extdata/TIL10_signature.txt
inst/extdata/metadata.csv
inst/extdata/quanTIseq_SimRNAseq_read_fractions.txt.gz
inst/extdata/quanTIseq_SimRNAseq_sequencing_depth.txt
inst/scripts/make-data_Song2017.R
inst/scripts/make-metadata.R
man/DClsei.Rd
man/DCrr.Rd
man/check_signature.Rd
man/dataset_racle.Rd
man/eset_to_matrix.Rd
man/extract_ti_from_se.Rd
man/fixMixture.Rd
man/get_densities.Rd
man/makeQN.Rd
man/mapGenes.Rd
man/quanTIseq.Rd
man/quantiplot.Rd
man/quantiseq_helper.Rd
man/quantiseqr-pkg.Rd
man/run_quantiseq.Rd
man/se_to_matrix.Rd
man/ti_quant_sim1700mixtures.Rd
tests/testthat.R
tests/testthat/setup-quantiseqr.R
tests/testthat/test-run_quantiseq.R
vignettes/img/concepts_deconvolution.gif
vignettes/references_quantiseqr.bib
vignettes/using_quantiseqr.Rmd
