mapGenes: Rename gene symbols before deconvolution
In federicomarini/quantiseqr: Quantification of the Tumor Immune contexture from RNA-seq data
View source: R/quantiseqr_helpers.R
mapGenes R Documentation
Rename gene symbols before deconvolution
Description
Rename gene symbols before deconvolution
Usage
mapGenes(mydata)
Arguments
mydata
Matrix or data.frame with RNA-seq gene TPM or microarray
gene expression values for all samples to be deconvoluted,
with gene symbols as row names and sample IDs as column names.
Value
The input matrix with updated gene names on the rows.
Examples
data(dataset_racle)
# mixture.fixgenes <- quantiseqr:::mapGenes(dataset_racle$expr_mat)
federicomarini/quantiseqr documentation built on May 7, 2024, 9:50 a.m.
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View source: R/quantiseqr_helpers.R
| mapGenes | R Documentation |
Rename gene symbols before deconvolution
Description
Rename gene symbols before deconvolution
Usage
mapGenes(mydata)
Arguments
mydata |
Matrix or data.frame with RNA-seq gene TPM or microarray gene expression values for all samples to be deconvoluted, with gene symbols as row names and sample IDs as column names. |
Value
The input matrix with updated gene names on the rows.
Examples
data(dataset_racle)
# mixture.fixgenes <- quantiseqr:::mapGenes(dataset_racle$expr_mat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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