makeQN: Perform quantile normalization of expression data

In federicomarini/quantiseqr: Quantification of the Tumor Immune contexture from RNA-seq data

Perform quantile normalization of expression data

Description

Perform quantile normalization of expression data

Usage

makeQN(mix.mat)

Arguments

mix.mat

Matrix or data.frame with microarray gene expression values for all samples to be deconvoluted, with gene symbols as row names and sample IDs as column names. Expression levels should be on non-log scale.

Value

The input matrix transformed with quantile normalization.

Examples

data(dataset_racle)
# mixture.quantile <- quantiseqr:::makeQN(dataset_racle$expr_mat)

federicomarini/quantiseqr documentation built on Dec. 20, 2024, 2:39 a.m.