Man pages for federicomarini/quantiseqr
Quantification of the Tumor Immune contexture from RNA-seq data
| check_signature | Check the signature matrix |
| dataset_racle | An exemplary dataset with samples from four patients with... |
| DClsei | Solve Least Squares with Equality and Inequality Constraints... |
| DCrr | Perform robust regression |
| eset_to_matrix | Convert a 'Biobase::ExpressionSet' to a gene-expression... |
| extract_ti_from_se | Extract tumor immune quantifications |
| fixMixture | Format the mixture matrix before deconvolution |
| get_densities | Scale deconvoluted cell fractions to cell densities |
| makeQN | Perform quantile normalization of expression data |
| mapGenes | Rename gene symbols before deconvolution |
| quantiplot | Plot the information on the tumor immune contexture |
| quanTIseq | Run quanTIseq deconvolution |
| quantiseq_helper | Helper functions for quanTIseq |
| quantiseqr-pkg | quantiseqr package |
| run_quantiseq | Run the quanTIseq algorithm |
| se_to_matrix | SummarizedExperiment to matrix |
| ti_quant_sim1700mixtures | quanTIseq output for the simulation data of 1700 mixtures for... |
