read10XVisium: Read the spatial transcriptomics data measured on 10X Visium...

read10XVisiumR Documentation

Read the spatial transcriptomics data measured on 10X Visium platform

Description

Read the spatial transcriptomics data measured on 10X Visium platform as a Seurat object, where the spatial coordinates are saved in the metadata, named "row" and "col".

Usage

  read10XVisium(dirname)

Arguments

dirname

A string, the dictory of Visium datasets

Details

Nothing

Value

return a Seurat object.

Note

nothing

Author(s)

Wei Liu

References

None

See Also

None

Examples

## Not run: 
  ## set your file directory, then read it.
  data_name <- "D/HCC"
  HCC1 <- read10XVisium(data_name)
  
## End(Not run)

feiyoung/DR.SC documentation built on March 23, 2024, 6:31 p.m.