readscRNAseq: Read the scRNAseq data measured on scRNA sequencing platform

In feiyoung/DR.SC: Joint Dimension Reduction and Spatial Clustering

Read the scRNAseq data measured on scRNA sequencing platform

Description

Read the single cell RNA sequencing data measured on scRNA sequencing platform as a Seurat object.

Usage

  readscRNAseq(mtx, cells, features, ...)

Arguments

mtx	a string, ame or remote URL of the mtx file
cells	a string, Name or remote URL of the cells/barcodes file
features	a string, Name or remote URL of the features/genes file
...	the arguments passing to ReadMtx

Details

Nothing

Value

return a Seurat object including expression matrix.

Note

nothing

Author(s)

Wei Liu

References

None

See Also

None

Examples

## Not run: 
  ### set the file directory, then read it.
  seu <- readscRNAseq(mtx="GSM3755564_16_Liver_Treg_matrix.mtx.gz",
                       features='GSM3755564_16_Liver_Treg_genes.tsv.gz',
                       cells='GSM3755564_16_Liver_Treg_barcodes.tsv.gz' )
  seu
  
## End(Not run)

feiyoung/DR.SC documentation built on March 23, 2024, 6:31 p.m.