Files in femeunier/LidarED
.Rbuildignore
.gitignore
DESCRIPTION
Figures_old/AGB.png
Figures_old/CA_old.png
Figures_old/H.png
Figures_old/comp_H.png
Figures_old/dbh.png
LidarED.Rproj
NAMESPACE
R/ED2_utils.R
R/allometry_utils.R
R/get_ED_default_pft.R
R/inventory_processing.R
R/make_IC_ED2.R
R/patchnumber2boundaries.R
R/read.fluxes.Q.R
R/read.fluxes.R
R/sample.allom.R
R/sample.params.R
R/sample.try.R
R/utils.R
README.md
data/FLUXCOM_ANN_GPP_2006-2013_Wytham.rds
data/Flux+Tower+AWS+data+2012+to+2018.gnumeric
data/Flux+Tower+AWS+data+2012+to+2018.xls
data/Fluxdata.month.RDS
data/Fluxes_data.png
data/Fluxtower.RDS
data/Fluxtower.csv
data/Fluxtower_extrap.RDS
data/Fluxtower_monthly.RDS
data/Wytham.OP.RDS
data/Wytham.OP2.RDS
data/Wytham.OP3.RDS
data/Wytham.xml
data/Wytham/Figures/BCI/povray/BCI-2004-01.png
data/Wytham/Figures/DAH-grass/povray/DAH-grass-2015-01.png
data/Wytham/Figures/Wytham/povray/Wytham-1500-01.png
data/Wytham/Figures/paracou/povray/paracou-1500-01.png
data/Wytham/Wytham_.lat51.780lon-1.340.css
data/Wytham/Wytham_.lat51.780lon-1.340.pss
data/Wytham_census_formatted.csv
data/Wytham_nodead.csv
data/Wytham_trees_summary_ED2.csv
data/Wytham_trees_summary_ED2_add.csv
data/Wytham_trees_summary_ED2_noDead.csv
data/Wytham_trees_summary_ED2_noDead.xlsx
data/Wytham_trees_summary_ED2_nodead_add.csv
data/all_configs.RDS
data/df_params_Wytham.RDS
data/params.errors.RDS
data/pecan.xml
data/species
inputs/Inventory/ED2IN
inputs/Inventory/config.xml
inputs/NBG/ED2IN
inputs/NBG/config.xml
inputs/TLS/ED2IN
inputs/TLS/config.xml
man/dbh2agb_exp.Rd
man/dbh2bd.Rd
man/dbh2bl.Rd
man/dbh2ca.Rd
man/dbh2h.Rd
man/extremum.Rd
man/get_ED_default_pft.Rd
man/hello.Rd
man/patchnumber_from_position.Rd
outputs/Wytham-Q-2005-01-00-000000-g01.h5
outputs/Wytham-Q-2005-04-00-000000-g01.h5
outputs/Wytham-Q-2005-05-00-000000-g01.h5
outputs/Wytham-Q-2005-07-00-000000-g01.h5
outputs/Wytham-Q-2005-08-00-000000-g01.h5
outputs/Wytham-Q-2007-01-00-000000-g01.h5
outputs/Wytham.RData
outputs/WythamPFT-Q-2007-01-00-000000-g01.h5
outputs/analysis.RData
outputs/df.OP.NBG.RDS
outputs/df.OP.verticalLAI.RDS
outputs/df.Wytham.ensemble.RDS
outputs/df.Wytham.ensembles.RDS
outputs/inputs.ensembles.RDS
outputs/saved/Wytham.RData
outputs/saved/analysis.RData
outputs/saved/df.Wytham.ensemble.RDS
outputs/saved/df.Wytham.ensembles.RDS
outputs/saved/inputs.ensembles.RDS
scripts/Add_Hmean.R
scripts/Carbon_Cycle.R
scripts/Figure_DBHs_corr.R
scripts/Figure_NBG.R
scripts/Figure_SA.R
scripts/Figure_distributions.R
scripts/Figure_fit.R
scripts/Figure_povray_data.R
scripts/Figure_scheme_Allom.R
scripts/Figure_size_dis.R
scripts/Figure_sizedis.R
scripts/Figure_sizedis_NBG.R
scripts/Figure_vardec.R
scripts/Figure_vardec2.R
scripts/Figure_verticalLAI.R
scripts/Figures_param_and_data.R
scripts/Figures_param_and_data_PFT.R
scripts/SA_costfunction.R
scripts/VarDecAGB.R
scripts/VarianceDecomposition.R
scripts/allometry.r
scripts/analyze_NBG_histo.R
scripts/analyze_outputs_ensemble.R
scripts/analyze_outputs_ensembles.R
scripts/analyze_verticalLAI.R
scripts/check.single.simu.R
scripts/clean.OP.R
scripts/comp.AGB.Bl.R
scripts/compare_simulation.R
scripts/compare_simulation_monthly.R
scripts/compute_Table6.R
scripts/create_census_fileED.R
scripts/explore_MET.R
scripts/explore_TRY.R
scripts/explore_data.R
scripts/explore_data_Fluxtower.R
scripts/figure_corr_dbh.R
scripts/footprint_tower.R
scripts/generate_all_ICs.R
scripts/generate_allom_uncertainties.R
scripts/generate_allometries.R
scripts/generate_ensembles.R
scripts/generate_scenario_IC.R
scripts/generate_scenario_IC_params.R
scripts/generate_scenarios.R
scripts/kill.runs.R
scripts/make_bioinit.r
scripts/model.data.comp.R
scripts/monthly_fluxdata.R
scripts/pft_allom_table.csv
scripts/plot_AGBandLAI.R
scripts/plot_ensemble.R
scripts/plot_ensembles.R
scripts/plot_posteriors.R
scripts/plot_povray.r
scripts/read_and_plot_fluxdata.R
scripts/recreate_OP.dir.R
scripts/restart.to.write.tfiles.R
scripts/scp_Qfiles.R
scripts/scp_Tfiles.R
scripts/scp_Tfiles.Rout
scripts/scp_results.R
scripts/scp_results.Rout
scripts/test_generate_ensembles.R
scripts/workflow_pecan.R
