ccptp_ptest: Cell-Cell interaction per Time-Point Permutate Test

In fenghuijian/FindPairs: Finding Intercellular Interaction Pairs

Description

Permutate Test for different cell-cell interaction of one time point

Usage

ccptp_ptest(object, ...)

## Default S3 method:
ccptp_ptest(object, ...)

## S3 method for class 'FindPairs'
ccptp_ptest(object, number, i, Asample_size,
  Bsample_size, seed, ...)

Arguments

object	An object
...	Arguments passed to other methods
number	Permutation numbers
i	The days of intercellular interaction, such as "day1"
Asample_size	The number of cell expressing symbol A virtually. We generalized the concept of permutation test. In the traditional permutation test, the number of random substitutions should be the total number of corresponding targets. But, in our permutation test, we set this number as an adjustable parameter. This paramter have two funcitons: one is to provide a fixed background distribution, and other is to reduce the impact of low number cells in the permutation.
Bsample_size	The number of cell expressing symbol B virtually.
seed	random seed

fenghuijian/FindPairs documentation built on Nov. 4, 2019, 12:40 p.m.