BuildFP: Setup the FindPairs object

Description Usage Arguments

View source: R/Objects.R

Description

Setup the FindPairs object

Usage

1
BuildFP(data, meta.data, interactive.type, ident = c("mtp", "stp"))

Arguments

data

the normalized data of gene expression

meta.data

annotation of cells. "Cell types" must be annotated. If it is multi-times-point, the times information should be added to the dataframe.

interactive.type

The feature expressed by cell types. The dataframe must contain two variables. This parameter needs to be set manually, and it must follow the format below.

  • the cell types must be in the first column

  • the gene feature must be in the second column, and gene feature have two varibales: "SYMBOLA" means this gene feature is "SYMBOLA" feature and "SYMBOLB" means this gene feature is "SYMBOLB" feature.

ident

Determine whether the input data contains multi-times information. There are two arguments, mtp: multi-times-point or stp: single-time-point.


fenghuijian/FindPairs documentation built on Nov. 4, 2019, 12:40 p.m.