readIndex: Read scan index
In fgcz/rawrr: Direct Access to Orbitrap Data and Beyond
readIndex R Documentation
Read scan index
Description
Read scan index
Usage
readIndex(rawfile)
Arguments
rawfile
the name of the raw file containing the mass spectrometry data from the Thermo Fisher Scientific instrument.
Value
returns a data.frame with the column names
scan, scanType, StartTime, precursorMass, MSOrder, charge, masterScan, and
dependencyType of all spectra.
Author(s)
Tobias Kockmann and Christian Panse <cp@fgz.ethz.ch>, 2020, 2021
Examples
Idx <- rawrr::sampleFilePath() |> rawrr::readIndex()
table(Idx$scanType)
plot(Idx$StartTime, Idx$precursorMass, col=as.factor(Idx$charge), pch=16)
table(Idx$MSOrder)
fgcz/rawrr documentation built on Nov. 8, 2024, 1:31 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| readIndex | R Documentation |
Read scan index
Description
Read scan index
Usage
readIndex(rawfile)
Arguments
rawfile |
the name of the raw file containing the mass spectrometry data from the Thermo Fisher Scientific instrument. |
Value
returns a data.frame with the column names
scan, scanType, StartTime, precursorMass, MSOrder, charge, masterScan, and
dependencyType of all spectra.
Author(s)
Tobias Kockmann and Christian Panse <cp@fgz.ethz.ch>, 2020, 2021
Examples
Idx <- rawrr::sampleFilePath() |> rawrr::readIndex()
table(Idx$scanType)
plot(Idx$StartTime, Idx$precursorMass, col=as.factor(Idx$charge), pch=16)
table(Idx$MSOrder)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.