getGenomeLengths: setPositionsCNV
In findlaycopley/PlotCNV: Plot a pretty copynumber plot
View source: R/getGenomeLengths.R
getGenomeLengths R Documentation
setPositionsCNV
Description
Set the start and coords for the geom_rect
Usage
getGenomeLengths(ReturnClass, genome = "hg19", FinalChrom = "chrX", ...)
Arguments
genome
string. The geneome to download from UCSC. Default: hg19
FinalChrom
string. The final chromosome to include in the plot. Default: chrX
Copynumber
Dataframe of your segments. REQUIRED
Details
This function will take a dataframe with sample, chr, start.pos, end.pos and call.
It will output a full plot of all the segments
Examples
setPositionsCNV(CNVvault_class)
findlaycopley/PlotCNV documentation built on Feb. 27, 2025, 1:55 a.m.
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View source: R/getGenomeLengths.R
| getGenomeLengths | R Documentation |
setPositionsCNV
Description
Set the start and coords for the geom_rect
Usage
getGenomeLengths(ReturnClass, genome = "hg19", FinalChrom = "chrX", ...)
Arguments
genome |
string. The geneome to download from UCSC. Default: hg19 |
FinalChrom |
string. The final chromosome to include in the plot. Default: chrX |
Copynumber |
Dataframe of your segments. REQUIRED |
Details
This function will take a dataframe with sample, chr, start.pos, end.pos and call. It will output a full plot of all the segments
Examples
setPositionsCNV(CNVvault_class)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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