orderCNV: orderCNV

In findlaycopley/PlotCNV: Plot a pretty copynumber plot

orderCNV

Description

Process data for copynumber plot

Usage

orderCNV(ReturnClass, order = TRUE, descending = TRUE, sampleOrder = NULL, ...)

Arguments

ReturnClass	Class of type CNVvault created using prepareCNV. REQUIRED
order	Should the samples be ordered or not
descending	sets the direction of the ordering. Default: TRUE
sampleOrder	(optional) vector of sample names. Order samples should be plotted

Details

This function will take a dataframe with sample, chr, start.pos, end.pos and call. It will create the sample info dataframe and set ordering for the samples

Examples

orderCNV(CNVvault_object)

findlaycopley/PlotCNV documentation built on Feb. 27, 2025, 1:55 a.m.