BuildVolcanoData: Create The Mutation Plot

In findlaycopley/Volcano: Generates a volcano plot

Description

Create The Mutation Plot

Usage

BuildVolcanoData(
  volcanoClass,
  SigName = "padj",
  FCName = "log2foldchange",
  pThres = 0.05,
  fcThres = 2,
  geneName = FALSE
)

Arguments

volcanoClass	object of class VolcanoClass
SigName	Name of the column with pvalues in (default: padj)
FCName	Name of the logFC column (default: log2foldchange)
pThres	p threshold (default: 0.05)

Examples

BuildVolcanoData(volcanoClass, SigName="padj",FCName="log2foldchange", pThres=0.05, fcThres=2)

findlaycopley/Volcano documentation built on Oct. 30, 2020, 4:42 p.m.