ExampleDGElist: Create The Mutation Plot

In findlaycopley/Volcano: Generates a volcano plot

Description

Create The Mutation Plot

Usage

ExampleDGElist

Arguments

DGE	data.frame of different gene expression
Names	TRUE/FALSE not used currently (default: FALSE)
SigName	Name of the column with pvalues in (default: padj)
FCName	Name of the logFC column (default: log2foldchange)
pThres	p threshold (default: 0.05)
PRINT	TRUE/FALSE - print the final plot? (default: TRUE)

Format

An object of class data.frame with 15000 rows and 2 columns.

Examples

volcanoPlot(DGE, Names=FALSE, SigName="padj",FCName="log2foldchange", pThres=0.05, fcThres=2, PRINT=TRUE)

findlaycopley/Volcano documentation built on Oct. 30, 2020, 4:42 p.m.