Files in fionarhuang/treeclimbR

An algorithm to find optimal signal levels in a tree

NEWS.md R/TreeHeatmap.R R/aggDS.R R/diffcyt_buildTree.R R/diffcyt_calcMediansByTreeMarker.R R/diffcyt_calcTreeCounts.R R/diffcyt_calcTreeMedians.R R/diffcyt_workflow.R R/edgerWrp.R R/evalCand.R R/fdr.R R/getCand.R R/getData.R R/getLevel.R R/infoCand.R R/medianByClusterMarker.R R/nodeResult.R R/parEstimate.R R/runDA.R R/runDS.R R/selNode.R R/simData.R R/topNodes.R R/tpr.R R/treeScore.R R/tree_findChild.R R/tree_findExcl.R R/tree_isConnect.R R/treeclimbR-package.R R/utils.R README.md inst/scripts/da_sim_100_30_18de.R inst/scripts/ds_sim_20_500_8de.R inst/scripts/throat_v35.R inst/scripts/tinytree_counts.R man/TreeHeatmap.Rd man/aggDS.Rd man/diffcyt_workflow.Rd man/edgerWrp.Rd man/evalCand.Rd man/fdr.Rd man/findChild.Rd man/findExcl.Rd man/getCand.Rd man/getData.Rd man/getLevel.Rd man/infoCand.Rd man/isConnect.Rd man/medianByClusterMarker.Rd man/nodeResult.Rd man/parEstimate.Rd man/runDA.Rd man/runDS.Rd man/selNode.Rd man/simData.Rd man/topNodes.Rd man/tpr.Rd man/treeScore.Rd man/treeclimbR-package.Rd tests/testthat.R tests/testthat/test-TreeHeatmap.R tests/testthat/test-aggDS.R tests/testthat/test-diffcyt_workflow.R tests/testthat/test-edgerWrp.R tests/testthat/test-evalCand.R tests/testthat/test-getCand.R tests/testthat/test-getData.R tests/testthat/test-getLevel.R tests/testthat/test-infoCand.R tests/testthat/test-medianByClusterMarker.R tests/testthat/test-nodeResult.R tests/testthat/test-parEstimate.R tests/testthat/test-runDA.R tests/testthat/test-runDS.R tests/testthat/test-selNode.R tests/testthat/test-simData.R tests/testthat/test-topNodes.R tests/testthat/test-tpr.R tests/testthat/test-treeScore.R tests/testthat/test-tree_findChild.R tests/testthat/test-tree_findExcl.R tests/testthat/test-tree_isConnect.R tests/testthat/test-utils.R vignettes/treeclimbR.Rmd