Files in fionarhuang/treeclimbR
An algorithm to find optimal signal levels in a tree
.Rbuildignore
.github/workflows/R-CMD-check.yaml
DESCRIPTION
NAMESPACE
NEWS.md
R/TreeHeatmap.R
R/aggDS.R
R/diffcyt_buildTree.R
R/diffcyt_calcMediansByTreeMarker.R
R/diffcyt_calcTreeCounts.R
R/diffcyt_calcTreeMedians.R
R/diffcyt_workflow.R
R/edgerWrp.R
R/evalCand.R
R/fdr.R
R/getCand.R
R/getData.R
R/getLevel.R
R/infoCand.R
R/medianByClusterMarker.R
R/nodeResult.R
R/parEstimate.R
R/runDA.R
R/runDS.R
R/selNode.R
R/simData.R
R/topNodes.R
R/tpr.R
R/treeScore.R
R/tree_findChild.R
R/tree_findExcl.R
R/tree_isConnect.R
R/treeclimbR-package.R
R/utils.R
README.md
inst/CITATION
inst/extdata/da_sim_100_30_18de.rds
inst/extdata/ds_sim_20_500_8de.rds
inst/extdata/throat_v35.rds
inst/extdata/tinytree_counts.rds
inst/scripts/da_sim_100_30_18de.R
inst/scripts/ds_sim_20_500_8de.R
inst/scripts/throat_v35.R
inst/scripts/tinytree_counts.R
man/TreeHeatmap.Rd
man/aggDS.Rd
man/diffcyt_workflow.Rd
man/edgerWrp.Rd
man/evalCand.Rd
man/fdr.Rd
man/findChild.Rd
man/findExcl.Rd
man/getCand.Rd
man/getData.Rd
man/getLevel.Rd
man/infoCand.Rd
man/isConnect.Rd
man/medianByClusterMarker.Rd
man/nodeResult.Rd
man/parEstimate.Rd
man/runDA.Rd
man/runDS.Rd
man/selNode.Rd
man/simData.Rd
man/topNodes.Rd
man/tpr.Rd
man/treeScore.Rd
man/treeclimbR-package.Rd
tests/testthat.R
tests/testthat/test-TreeHeatmap.R
tests/testthat/test-aggDS.R
tests/testthat/test-diffcyt_workflow.R
tests/testthat/test-edgerWrp.R
tests/testthat/test-evalCand.R
tests/testthat/test-getCand.R
tests/testthat/test-getData.R
tests/testthat/test-getLevel.R
tests/testthat/test-infoCand.R
tests/testthat/test-medianByClusterMarker.R
tests/testthat/test-nodeResult.R
tests/testthat/test-parEstimate.R
tests/testthat/test-runDA.R
tests/testthat/test-runDS.R
tests/testthat/test-selNode.R
tests/testthat/test-simData.R
tests/testthat/test-topNodes.R
tests/testthat/test-tpr.R
tests/testthat/test-treeScore.R
tests/testthat/test-tree_findChild.R
tests/testthat/test-tree_findExcl.R
tests/testthat/test-tree_isConnect.R
tests/testthat/test-utils.R
vignettes/treeclimbR.Rmd
vignettes/treeclimbR.bib
