API for florian0512/SarlaccSeq
Pipeline for Oxford Nanopore RNA-Seq Data Analysis
| Global functions | |
|---|---|
| .FASTQ2QSDS | Source code |
| .align_AA_internal | Source code |
| .align_AT_internal | Source code |
| .align_BA_internal | Source code |
| .align_TA_internal | Source code |
| .align_and_extract | Source code |
| .align_general_internal | Source code |
| .compute_threshold | Source code |
| .create_encoding_vector | Source code |
| .extract_internal | Source code |
| .get_alignment_scores | Source code |
| .get_clip_length | Source code |
| .get_front_and_back | Source code |
| .internal_msa | Source code |
| .parallelize | Source code |
| .qual2class | Source code |
| .resolve_strand | Source code |
| .scramble_input | Source code |
| .setup_subseqs | Source code |
| .tied_overlap | Source code |
| adaptorAlign | Man page Source code |
| barcodeAlign | Man page Source code |
| consensusReadSeq | Man page Source code |
| errorFinder | Man page Source code |
| expectedDist | Man page Source code |
| extractSubseq | Man page Source code |
| filterReads | Man page Source code |
| getAdaptorThresholds | Man page Source code |
| getBarcodeThresholds | Man page Source code |
| homopolymerFinder | Man page Source code |
| homopolymerMatcher | Man page Source code |
| mockReads | Source code |
| multiReadAlign | Man page Source code |
| qualityAlign | Man page Source code |
| qualityMask | Man page Source code |
| realizeReads | Man page Source code |
| sam2ranges | Man page Source code |
| tuneAlignment | Man page Source code |
| umiGroup | Man page Source code |
