Man pages for florian0512/SarlaccSeq
Pipeline for Oxford Nanopore RNA-Seq Data Analysis

adaptorAlignAlign adaptors to reads
barcodeAlignDetermine barcode identity
consensusReadSeqConsensus read sequence
errorFinderFind sequencing errors
expectedDistCalculate expected distances
extractSubseqExtract subsequence
filterReadsFilter out reads without adaptors
getAdaptorThresholdsGet score thresholds for adaptor alignments
getBarcodeThresholdsGet score thresholds for barcode alignments
groupAlignedGroup aligned reads by location
groupReadsGroup reads by sequence similarity
homopolymerFinderFind homopolymers
homopolymerMatcherMatch homopolymer lengths
multiReadAlignMultiple read alignment
qualityMaskMask bases by quality
realizeReadsRealize read sequences
sam2rangesSAM to genomic ranges
tuneAlignmentTune alignment parameters
umiGroupGroup equivalent UMIs
florian0512/SarlaccSeq documentation built on Nov. 23, 2018, 9:32 p.m.