Man pages for florian0512/SarlaccSeq
Pipeline for Oxford Nanopore Single-Cell RNA-Seq Data Analysis

adaptorAlignAlign adaptors to reads
chopReadsChop adaptors off reads
clusterReadsCluster reads
consensusReadSeqConsensus read sequence
errorFinderFind sequencing errors
expectedDistCalculate expected distances
getScoreThresholdsGet score thresholds for adaptor alignments
homopolymerFinderFind homopolymers
homopolymerMatcherMatch homopolymer lengths
multiReadAlignMultiple read alignment
readsMergerCreate consensus sequences
sam2rangesSAM to genomic ranges
tuneAlignmentTune alignment parameters
umiExtractExtract UMIs
umiGroupGroup equivalent UMIs
florian0512/SarlaccSeq documentation built on June 17, 2018, 7:53 p.m.