API for florian0512/sarlacc
Pipeline for Oxford Nanopore RNA-Seq Data Analysis

Global functions
FASTQ2QSDS Source code
adaptorAlign Man page Source code
align_AA_internal Source code
align_AT_internal Source code
align_TA_internal Source code
align_and_extract Source code
align_to_barcodes Source code
assign_qualities Source code
barcodeAlign Man page Source code
cluster_paf Source code
compute_threshold Source code
consensusReadSeq Man page Source code
create_encoding_vector Source code
errorFinder Man page Source code
expectedDist Man page Source code
filterReads Man page Source code
getAdaptorThresholds Man page Source code
getBarcodeThresholds Man page Source code
get_alignment_scores Source code
get_clip_length Source code
get_front_and_back Source code
groupReads Man page Source code
guess_umi_position Source code
homopolymerFinder Man page Source code
homopolymerMatcher Man page Source code
mockReads Source code
multiReadAlign Man page Source code
nternal_msa Source code
parallelize Source code
process_paf Source code
qual2class Source code
qualityMask Man page Source code
realizeReads Man page Source code
resolve_strand Source code
sam2ranges Man page Source code
scramble_input Source code
setup_alignment_args Source code
tied_overlap Source code
tuneAlignment Man page Source code
umiExtract Man page Source code
umiGroup Man page Source code
florian0512/sarlacc documentation built on Oct. 7, 2018, 4:08 p.m.