Files in florian0512/sarlacc
Pipeline for Oxford Nanopore RNA-Seq Data Analysis

DESCRIPTION
NAMESPACE
R/adaptorAlign.R R/barcodeAlign.R R/consensusReadSeq.R R/errorFinder.R R/expectedDist.R R/filterReads.R R/getAdaptorThresholds.R R/getBarcodeThresholds.R R/groupReads.R R/homopolymerFinder.R R/homopolymerMatcher.R R/mockReads.R R/multiReadAlign.R R/namespace.R R/qualityMask.R R/realizeReads.R R/sam2ranges.R R/tuneAlignment.R R/umiExtract.R R/umiGroup.R man/adaptorAlign.Rd man/barcodeAlign.Rd man/consensusReadSeq.Rd man/errorFinder.Rd man/expectedDist.Rd man/filterReads.Rd man/getAdaptorThresholds.Rd man/getBarcodeThresholds.Rd man/groupReads.Rd man/homopolymerFinder.Rd man/homopolymerMatcher.Rd man/multiReadAlign.Rd man/qualityMask.Rd man/realizeReads.Rd man/sam2ranges.Rd man/tuneAlignment.Rd man/umiExtract.Rd man/umiGroup.Rd
src/Biostrings_stubs.c
src/DNA_input.cpp
src/DNA_input.h
src/compute_lev_masked.cpp
src/count_gaps.cpp
src/create_consensus.cpp
src/find_errors.cpp
src/get_aligned_sequence.cpp
src/homopolymer.cpp
src/init.cpp
src/mask_bad_bases.cpp
src/quality_encoding.cpp
src/quality_encoding.h
src/sarlacc.h
src/sorted_trie.cpp
src/sorted_trie.h
src/umi_clusterer.cpp
src/umi_clusterer.h
src/umi_group.cpp
src/unmask_alignment.cpp
src/utils.cpp
src/utils.h
src/value_store.h
tests/testthat.R tests/testthat/test-aligned.R tests/testthat/test-consensus.R tests/testthat/test-error.R tests/testthat/test-extract.R tests/testthat/test-homopolymer.R tests/testthat/test-levenshtein.R tests/testthat/test-masking.R tests/testthat/test-tuning.R tests/testthat/test-umicluster.R vignettes/correction.Rmd vignettes/profiling.Rmd
florian0512/sarlacc documentation built on Oct. 7, 2018, 4:08 p.m.