bubbles: Method Bubbles plot

In flr/FLCore: Core Package of FLR, Fisheries Modelling in R

Method Bubbles plot

Description

This method plots three dimensional data such as matrices by age and year or age-class, very common in fisheries. The area of each bubble is proportional to the corresponding value in the matrix. Note that bubbles accepts an argument bub.scale to control the relative size of the bubbles. Positive and negative values have separate colours.

Usage

## S4 method for signature 'formula,FLQuant'
bubbles(x, data, bub.scale = 2.5, col = c("blue", "red"), ...)

## S4 method for signature 'formula,data.frame'
bubbles(x, data, bub.scale = 2.5, col = c("blue", "red"), ...)

## S4 method for signature 'formula,FLCohort'
bubbles(x, data, bub.scale = 2.5, ...)

## S4 method for signature 'formula,FLQuants'
bubbles(x, data, bub.scale = 2.5, bub.col = gray(c(0.1, 0.1)), ...)

Generic function

bubbles(x, data)

Author(s)

The FLR Team

See Also

lattice, FLQuant, FLQuants,FLCohort

Examples

data(ple4)
bubbles(age~year, data=catch.n(ple4))
bubbles(age~year, data=catch.n(ple4), bub.scale=5)
bubbles(age~cohort, data=FLCohort(catch.n(ple4)), bub.scale=5)

qt01 <- log(catch.n(ple4)+1)
qt02 <- qt01+rnorm(length(qt01))
flqs <- FLQuants(qt01=qt01, qt02=qt02)
bubbles(age~year|qname, data=flqs, bub.scale=1)

qt03 <- FLQuant(rnorm(100),dimnames=list(age=as.character(1:10),
  year=as.character(1:10)))
bubbles(age~year, data=qt03, bub.scale=7, col=c("black","red"), pch=16)

flr/FLCore documentation built on May 4, 2024, midnight