looi: Run a sequence of assessments leaving one fleet (non-catch)...

In flr/FLSAM: An Implementation of the State-Space Assessment Model for FLR

Run a sequence of assessments leaving one fleet (non-catch) in or out

Description

Perform a sequence of assessments where each of the fleets are excluded or included from the assessment run. It is also possible to run intermediate states where 2 or more fleets are excluded or included from the assessment

Usage

looi(stck, tun, ctrl, type="full")

loo(stck, tun, ctrl)
loi(stck, tun, ctrl)

Arguments

stck	FLSAM object that specifies the stock characteristics
tun	FLIndices object to use within the 'looi' assessment and out of which fleets will be included or dropped
ctrl	FLSAM.control object that specifies the assessment settings
type	Selects the type of LOOI run to perform. Options are type: 'full' runs all combinations of leaving fleets in and out (may take a long time to run) type: 'LOI' runs all combinations keeping only 1 fleet in type: 'LOO' runs all combinations leaving only 1 fleet out. Default value is 'full'.

Details

The 'loo' and 'loi' methods call the 'looi' method with the appropriate type selected, and can be used as convenient shotcut

Value

An FLSAMs object is returned where the names slot contains the combination of fleets used within the assessments

Author(s)

Niels T. Hintzen and Mark R. Payne

See Also

FLSAMs

Examples

#- Load data
data(NSH)
data(NSH.sam)

#- Run a LOI
one.in <- loi(NSH,NSH.tun,NSH.ctrl)
plot(one.in)

#- Run a LOO
one.out <- loo(NSH,NSH.tun,NSH.ctrl)
plot(one.out)

flr/FLSAM documentation built on April 28, 2024, 9:06 p.m.