NEWS.md

In flr/ggplotFL: Using ggplot2 in FLR

ggplotFL 2.6.11

NEW FEATURES

• plot(FLSRs) has now argument facets=FALSE to output plot in a format suitable for facetting.

ggplotFL 2.6.9

NEW FEATURES

• pubpng() function to output good quality png plot files.
• geom_worm to add worm plots of single iterations on tyop of geom_flquantiles
• cohcorrplot now returns a ggplot object.
• Default probs for plot(FLQuant) amd plot(FLQuants) are now set as probs=c(0.05, 0.25, 0.50, 0.75, 0.95).
• plot(FLPar) with histogram and density for each param.
• plot(FLQuant, FLQuant, ...) to place them on a single plot.

ggplotFL 2.6.8

NEW FEATURES

• New plot(FLindex) and plot(FLIndices) methods. They will both plot the @index slot, faceted by age. In thr second case, indices will be standardized.

• New plot(FLQuanPoint) and plot(FLQuantPoint, FLQuants) methods.

• integer_breaks function useful for ages in the x axis.

• geom_flpar allows ploting reference points and similar variables as horizontal lines.

ggplotFL 2.6.6

USER-VISIBLE CHANGES

• Label for F in plot(FLStock) now includes age-range used by fbar()

ggplotFL 2.6.5

USER-VISIBLE CHANGES

• Changed span of plot(FLSR) loess smoothers to 3

BUG FIXES

• label_flqs deals better with unparseable strings

ggplotFL 2.6.2

BUG FIXES

• labeller failed on some empty units, now drops NA and ' '

UTILITIES

• %+% operator redefined here to account for ggplot2 use of it.

ggplotFL 2.6.1

NEW FEATURES

• New package vignette
• plot() method for FLQuants, reused by plot(FLStock)
• plot() method for FLQuant
• plot(FLStocks) now uses geom_ribbon for objects with multiple iters
• Initial plot(FLIndex)

USER-VISIBLE CHANGES

• Default ribbons for plot(FLStocks) with iters have no borders
• Ribbons for 90% intervals in plot for FLQuant and FQuants now have a dotted line added.
• plot(FLSR) has been improved: axis labels, use of plotmath and regression line on residuals AR plot.
• plot(FLQuant) now allows specification of quantiles
• plot methods now use year in the xaxis if only one season, keeps using date, as ISOdate, otherwise

BUG FIXES

• Call to dcast had wrong argument name for value.var
• FIXED Plotted model line in panel 1 is wrong #3
• FIXED Better labels in plot(FLSR) #4
• CHANGED back to geom_line to avoid sorting data.frame

DOCUMENTATION

- Added mention to plot(FLStocks) to vignette

DEPRECATED & DEFUNCT

flr/ggplotFL documentation built on Feb. 10, 2024, 3:57 p.m.