Description Usage Arguments Details Value
Given a neuron and a particular tag, this will return a data frame (optionally written to a CSV) with the node IDs, coordinates, and CATMAID URLs.
1 2 3 |
neuron |
Required; a A CATMAID |
tag |
Required; a string specifying a tag. |
node.id |
Optional; the ID of a node at which to cut the neuron, if only a portion of the neuron should be considered. |
node.direction |
If a cut node is provided, which portion of the cut neuron to retain. Options are |
volume |
Optional; a string specifying a FAFB neuropil to filter the tagged nodes. |
fileout |
Optional; the path to a CSV file where the result should be written. |
Requires the catmaid.server
option to be set in .Rprofile
A subset of the neuron's treenode data frame (d
) including only tagges nodes, with a CATMAID URL for each.
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