formatAlignments: formatAlignments
In fmichonneau/rsowh: rsowh - an R interface for the SO-WH test

Description Usage Arguments Details Value Author(s) See Also

Apply splitMultiAlignments on all loci.

1	formatAlignments(pattern, prefix, pathin, pathout)

`pattern`	character string that matches the files containing the simulated replicates.
`prefix`	character string to be appended to each individual file name across all loci
`pathin`	path (i.e., directory) where the simulated files are located.
`pathout`	path (i.e., directory) where the the individual replicates will be located.

Given a regexp pattern that match multiple files representing loci of an alignment simulated by seq-gen, this function applies splitMultiAlignments on each of them.

This function may produce a large number of files. If you generated 500 replicates and you have 5 loci, 2,500 files will be generated.

If pathout does not exist, it will be created.

TRUE, but really used for its side effect of generating individual replicate for each locus.

Francois Michonneau

splitMultiAlignments

fmichonneau/rsowh documentation built on May 16, 2019, 1:47 p.m.