analyze.coalescent | analyzes the fit of coalescent genealogies to species trees |
analyze.sequences | analyzes the fit of DNA sequences to gene trees estimated by... |
mstree | simulate coalescent genealogies given a species tree using... |
plot.coalescentteststats | plots output from analyze.coalescent |
plot.sequenceteststats | plots output from analyze.sequences |
read.gtree.samples | reads gene tree samples from the posterior generated by... |
read.sptree.samples | reads in *BEAST species tree samples. |
read.starbeast | this function reads in the results of a *BEAST phylogenetic... |
starbeastPPS-package | A posterior predictive check for the multispecies coalescent... |
summary.coalescentteststats | summarize multispecies coalescent PPS |
summary.sequenceteststats | summarize sequence data PPS |
tamias | Tamias phylogeny data |
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