read.sptree.samples: reads in *BEAST species tree samples.
In fmichonneau/starbeastPPS: A posterior predictive check for the multispecies coalescent model implemented in *BEAST
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
this function reads in *BEAST species trees, including the branch effective population size values.
Usage
1
Arguments
file
a nexus file containing species trees generated by *BEAST.
Value
an ape 'multiphylo' object. each phylo object has vectors corresponding to the branch effective population sizes appended. this function should be able to read any of the population size models in *BEAST, but downstream analyses only work on the "piecewise constant" model.
Author(s)
Noah Reid
References
Reid et al. 2012
Heled and Drummond 2010
Examples
1
2
3
##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
fmichonneau/starbeastPPS documentation built on May 16, 2019, 1:47 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
this function reads in *BEAST species trees, including the branch effective population size values.
Usage
1 |
Arguments
file |
a nexus file containing species trees generated by *BEAST. |
Value
an ape 'multiphylo' object. each phylo object has vectors corresponding to the branch effective population sizes appended. this function should be able to read any of the population size models in *BEAST, but downstream analyses only work on the "piecewise constant" model.
Author(s)
Noah Reid
References
Reid et al. 2012 Heled and Drummond 2010
Examples
1 2 3 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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