View source: R/TabulaMurisSenisBulk.R
TabulaMurisSenisBulk | R Documentation |
Access the bulk RNA-seq data from the Tabula Muris Senis consortium.
TabulaMurisSenisBulk(infoOnly = FALSE)
infoOnly |
Logical scalar. If |
The data set was downloaded from GEO (accession number GSE132040). The summary statistics from HTSeq-count were combined with the provided sample metadata and included in the colData of the object. In addition, gene annotations from GENCODE vM19 were downloaded and included in the rowRanges of the object.
If infoOnly
is FALSE
, return a
SingleCellExperiment object with a single matrix of counts.
Otherwise, returns 'NULL'.
Charlotte Soneson
Schaum et al (2019): The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude. bioRxiv doi:10.1101/662254.
The Tabula Muris Consortium (2020): A single-cell transcriptomic atlas characterizes ageing tissues in the mouse. Nature 583:590–595.
if (interactive()) {
sce <- TabulaMurisSenisBulk()
}
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