complete.plotmap: Map every individual.
In forestgeo/ctfs: Tools for the Analysis of Forest Dynamics

This creates a map with every individual shown. The area to be mapped can be chosen, allowing maps of small areas.

complete.plotmap(cns = bci.full6, spnames = NULL, mindbh = 10,
  export = "no", nospp = 3, plotdim = c(1000, 500),
  clrlist = c("blue", "green", "red", "yellow", "gray"),
  ptsize = c(0.45, 0.3), xrange = c(0, 100), yrange = c(0, 100),
  wd = 1100, ht = 850, side = 6, labsize = 1.75, axisdiv = 10,
  filepath = "/home/condit/data/maps/", outfile = "fullplotmap")

`cns`	a full census dataset (all species)
`spnames`	names of species to map, using the mnemonic in the R tables
`mindbh`	The minimum diameter above which the counts are done. Trees smaller than `mindbh` are excluded. If `NULL`, all living trees are included.
`export`	`export = "no"`, does nothing, so the next graph uses the default R device. With this option, the size of the graph cannot have been set larger than the default size, which is usually 7 inches. `export = "unix"`, a new graphics window in unix, size `h` and width `w`, will be opened allowing you to alter the size of the output. `export = "windows"`, or `export = "mac"` are similar to `export = "unix"` but for windows and mac. `export = format` exports the graph to a specific file format: "pdf", "png", "jpg", "bmp", "emf".
`nospp`	number of species to overlay; can be NULL or 0 for none
`plotdim`	The x and y dimensions of the plot.
`clrlist`	colors to use for the species to be overlaid
`ptsize`	A vector of two numbers giving the point size for the background of all species (first one) and for the individual species (second one).
`xrange`	Minimum and maximum x and y coordinates of area graphed. If `NULL`, all `x` (or `y`) are included.
`yrange`	Minimum and maximum x and y coordinates of area graphed. If `NULL`, all `x` (or `y`) are included.
`wd`	Height and width of the overall graph. The default work for pdf export or mapping to the screen, and ht and wd are inches. But if export is png, jpg, emf, height and width are pixels and need to be 500-1000.
`ht`	Height and width of the overall graph. The default work for pdf export or mapping to the screen, and ht and wd are inches. But if export is png, jpg, emf, height and width are pixels and need to be 500-1000.
`side`	the side in inches of the graph; see map()
`labsize`	Size of axis labels.
`axisdiv`	the division between tick marks; must be a vector of 2, first for x ticks then for y ticks
`filepath`	The folder to which map will be exported.
`outfile`	Filename for output.

On top of the map of every individual, individual species can be overlaid in different colors. If nospp is set NULL, no species are added. If spnames is set NULL, then the most abundant species in the plot are chosen, up to the number nospp.

forestgeo/ctfs documentation built on May 3, 2019, 6:44 p.m.