check_assertions: Check assertions in occurrences object
In fozy81/NBN4R: National Biodiversity Network Atlas (UK and Ireland) Data and Resources in R
Description
Usage
Arguments
Value
References
Examples
Description
This provides a data.frame detailing the assertions that are found in a dataset returned from occurrences.
Usage
1
Arguments
x
list: an object returned from occurrences
Value
A dataframe of assertions column names, descriptions and categories/error codes. If no assertions are in the dataset, NULL is returned.
References
https://api.nbnatlas.org/, http://biocache.ala.org.au/ws/assertions/codes
Examples
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#download species data with all possible assertions
## Not run:
x <- occurrences(taxon="golden plover",download_reason_id=10,qa=nbn_fields("assertions")$name)
asserts <- check_assertions(x) #data.frame of assertions, their description and column names
asserts$description # List out descriptions of all (current) assertions
tmp <- x$data[,names(x$data) %in% asserts$name] ## assertion columns from data
which(colSums(tmp)>0) ## discard those not seen in the data
## End(Not run)
fozy81/NBN4R documentation built on May 19, 2019, 8:22 a.m.
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Description Usage Arguments Value References Examples
Description
This provides a data.frame detailing the assertions that are found in a dataset returned from occurrences.
Usage
1 |
Arguments
x |
list: an object returned from |
Value
A dataframe of assertions column names, descriptions and categories/error codes. If no assertions are in the dataset, NULL is returned.
References
https://api.nbnatlas.org/, http://biocache.ala.org.au/ws/assertions/codes
Examples
1 2 3 4 5 6 7 8 9 10 | #download species data with all possible assertions
## Not run:
x <- occurrences(taxon="golden plover",download_reason_id=10,qa=nbn_fields("assertions")$name)
asserts <- check_assertions(x) #data.frame of assertions, their description and column names
asserts$description # List out descriptions of all (current) assertions
tmp <- x$data[,names(x$data) %in% asserts$name] ## assertion columns from data
which(colSums(tmp)>0) ## discard those not seen in the data
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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