aggregateRiboSeq: aggregateRiboSeq

In freesci/rGWIPS: working with RiboSeq data from GWIPS database

Description

This function analyses the data frame returned by overlapsRiboSeq function and returns modified data frame where each position (first:width) of selected Genomic Ranges has its own column. This function attaches also sequences in its own column and prepares data for further analysis using machine learning algorithms.

Usage

aggregateRiboSeq(x, genome, str)

Arguments

x	data frame returned by overlapsRiboSeq function
genome	BSgenome object containing reference genome
str	character: +/-/* indicating forward, reverse or both DNA strands; required in case RiboSeq data is frame agnostic

Value

Data frame with aggregated data

freesci/rGWIPS documentation built on May 31, 2019, 8:07 a.m.