selectFeaturesGR: selectFeaturesGR
In freesci/rGWIPS: working with RiboSeq data from GWIPS database
Description
Usage
Arguments
Value
Description
Returns new GRanges object based on the selection criteria.
Usage
1
2
selectFeaturesGR(gr, type = "start", width = 10, feature = "gene",
randomranges = NULL)
Arguments
gr
GRanges object - it is assumed that it is full genomic annotation imported from GFF
type
Could be "start", "end" or "random"
width
Integer indicating length of selected ranges
feature
"gene" or "exon", to be selected from GFF annotation. "gene" is the default.
randomranges
optional argumument, required if type="random" is supplied; this is a
vector of widths
Value
GenomicRange object containing only selected features
freesci/rGWIPS documentation built on May 31, 2019, 8:07 a.m.
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Description Usage Arguments Value
Description
Returns new GRanges object based on the selection criteria.
Usage
1 2 | selectFeaturesGR(gr, type = "start", width = 10, feature = "gene",
randomranges = NULL)
|
Arguments
gr |
|
type |
Could be "start", "end" or "random" |
width |
Integer indicating length of selected ranges |
feature |
"gene" or "exon", to be selected from GFF annotation. "gene" is the default. |
randomranges |
optional argumument, required if |
Value
GenomicRange object containing only selected features
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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