createAligmentMatrix: Creates aligment matrix for given DNA sequences.

In frosinastojanovska/Bioinformatics: A collection of functions for Bioinformatics

Description

Creates aligment matrix for given DNA sequences.

Usage

createAligmentMatrix(DNA, startPositions, t, l)

Arguments

DNA	A matrix with DNA sequences in each row.
startPositions	A vector with start position for every DNA sequence.
t	A number indicating the number of DNA sequences.
l	Lenght of the motif.

Value

Aligment matrix

Examples

DNA <- matrix(c("A","C","A","C","A","C","G","A","A","C","U","G","A","C","G","C","A","C","G","G","G","C","U","A"), nrow=4, ncol=6)
startPositions <- c(1,2,1,3)
t <- nrow(DNA)
createAligmentMatrix(DNA, startPositions, t, 4)

frosinastojanovska/Bioinformatics documentation built on May 16, 2019, 3:32 p.m.