S2B: S2B main function

In frpinto/S2B: Specific Specific Betweenness

Description

This function computes S2B scores, with specificity scores.

Usage

S2B(seed_graph, index1, index2, nrep, nrep2)

Arguments

seed_graph	igraph object of the network to be searched.
index1	vector with integer node identifiers.
index2	vector with integer node identifiers.
nrep	number of randomizations (shuffle edges maintaining node degree) to compute specificity score 1
nrep2	number of randomizations (shuffle seed identity) to compute specificity score 2

Value

s2btable - dataframe with with S2B and specificity scores for each node in the graph

seedmat1 - matrix with one row for each node in the network and a column for each seed in index1. If the matrix element (i,j) is 1, then index1[j] was connected to the other seed set through a shortest path going through node i, and shorter than meandist

seedmat2 - matrix similar to seedmat1 but reffering to index 2 seeds

maxS2B - theoretical maximum of absolute S2B scores for this network and seed sets

frpinto/S2B documentation built on May 8, 2019, 2:33 a.m.