Files in functionalgenomics/atena
Analysis of Transposable Elements
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/ERVmap.R
R/TEtranscripts.R
R/Telescope.R
R/annotations.R
R/atena.R
R/atenaMethod.R
R/overlappingModes.R
R/qtex.R
R/utils.R
R/zzz.R
README.md
inst/extdata/Top28TEs.rds
inst/extdata/Top50genes.rds
inst/extdata/control_KD.bai
inst/extdata/control_KD.bam
inst/extdata/piwi_KD.bai
inst/extdata/piwi_KD.bam
inst/extdata/rmskatLTRrlen80flenpartoth.rds
inst/scripts/create-data_OhtaniSaito13.Rmd
inst/unitTests/test_ERVmap.R
inst/unitTests/test_TEtranscripts.R
inst/unitTests/test_Telescope.R
inst/unitTests/test_new_TEtranscript_functions.R
inst/unitTests/test_new_Telescope_functions.R
man/ERVmapParam-class.Rd
man/OneCodeToFindThemAll.Rd
man/QuantifyParam-class.Rd
man/TEtranscriptsParam-class.Rd
man/TelescopeParam-class.Rd
man/annotaTEs.Rd
man/annotaTEsGetters.Rd
man/atena-package.Rd
man/atenaParam-class.Rd
man/ovFunctions.Rd
man/qtex.Rd
man/rmskatenaparser.Rd
man/rmskbasicparser.Rd
man/rmskidentity.Rd
tests/runTests.R
vignettes/atena.Rmd
vignettes/bibliography.bib
