Description Usage Arguments Value
Before using genotypes in models, this function can be used to filter out SNPs that are fixed, have a low call rate, etc.
1 | filter_geno(geno, call_rate = 0.9, fix = TRUE)
|
geno |
matrix of genotyping data with individuals in rows and SNPs in columns. Formatted in dosage of B format. |
call_rate |
numeric proportion indicating the call rate that must be met |
fix |
boolean. If TRUE, remove SNPs that are fixed among all animals |
geno matrix with removed (filtered out) SNPs
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