recode_geno: recode_geno - converts an ACTG coded SNP to a A/B coded SNP

In funkhou9/snpTools: Miscellaneous tools for working with SNP genotyping data

Description

recode_geno - converts an ACTG coded SNP to a A/B coded SNP

Usage

recode_geno(SNPname, geno, table, Bdose = FALSE)

Arguments

SNPname	character of SNP name to recode
geno	matrix of genotyping data with individuals in rows and SNPs in columns. Formatted in ATCG "forward" format
table	data.frame consisting of an equivalency table needed for conversion
Bdose	boolean. If true, returns dosage of allele B. If false, returns A/B.

Value

numeric/character vector with recoded genotypes for all individuals for a single SNP in SNPname

funkhou9/snpTools documentation built on May 16, 2019, 4:05 p.m.