Files in fuscada2/PeakMapper
Flexible Mapping of Genomic Coordinates to Nearest Features
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
PeakMapper.Rproj
R/checkInput.R
R/data.R
R/importFiles.R
R/peakMapping.R
R/runPeakMapperApp.R
R/visualizeResults.R
README.md
data/H3K27me3Peaks.rda
data/H3K27me3PeaksSmall.rda
data/WS263Genes.rda
data/testGenes.rda
data/testPeaks.rda
inst/CITATION
inst/extdata/FUSCA_D_A1.png
inst/extdata/H3K27me3Peaks.bed
inst/extdata/H3K27me3PeaksSmall.bed
inst/extdata/WS263Genes.bed
inst/extdata/testGenes.bed
inst/extdata/testPeaks.bed
inst/shiny-scripts/app.R
man/H3K27me3Peaks.Rd
man/H3K27me3PeaksSmall.Rd
man/WS263Genes.Rd
man/checkBEDInput.Rd
man/checkMappingResultInput.Rd
man/createMatrices.Rd
man/getBackgroundStyle.Rd
man/getDistanceToPeak.Rd
man/getFeaturesForPeak.Rd
man/getOverlapPercent.Rd
man/importBED.Rd
man/mapPeaks.Rd
man/plotNumMappingsPerPeak.Rd
man/plotOverlapDistribution.Rd
man/plotPeakLocations.Rd
man/plotPeakOrientations.Rd
man/runPeakMapperApp.Rd
man/testGenes.Rd
man/testPeaks.Rd
tests/testthat.R
tests/testthat/testErrorChecking.R
tests/testthat/testFileImporting.R
tests/testthat/testPeakMapping.R
tests/testthat/testVisualizationFunctions.R
vignettes/.gitignore
vignettes/Introduction_to_PeakMapper.Rmd
