runPeakMapperApp: Launch the Shiny app for running PeakMapper

In fuscada2/PeakMapper: Flexible Mapping of Genomic Coordinates to Nearest Features

Description

This function launches the Shiny app that allows the user to run PeakMapper as an interactive session. Through this app, the user can upload BED-formatted files, map uploaded peaks onto uploaded features, and visualize the results of any generated mappings. The code for this Shiny app can be found in the shiny-scripts directory.

Usage

runPeakMapperApp()

Details

Sample BED files for uploading to the app can be found in the extdata directory.

Within this app, several blocks of code are based off of code provided in some of RStudio's online Shiny tutorials - instances where app code is based off of tutorial code are clearly noted within the app code, and references to these tutorials are provided below. The actual code for runPeakMapperApp is based off of a template for running Shiny apps presented by Anjali Silva.

Value

This function does not return anything, but running it launches a session of PeakMapper's Shiny app.

References

"Build a dynamic UI that reacts to user input". 15 October 2019. Accessed 3 December 2019. https://shiny.rstudio.com/articles/dynamic-ui.html

"Help users download data from your app". 28 June 2017. Accessed 3 December 2019. https://shiny.rstudio.com/articles/download.html

Winston Chang. "Changing the values of inputs from the server". Accessed 3 December 2019. https://shiny.rstudio.com/gallery/update-input-demo.html

Examples

## Not run: 
  runPeakMapperApp()

## End(Not run)

fuscada2/PeakMapper documentation built on Dec. 8, 2019, 12:35 p.m.