testGenes: An example dataset of 5 genes
In fuscada2/PeakMapper: Flexible Mapping of Genomic Coordinates to Nearest Features

Description Usage Format Source

A example dataset of 5 genomic coordinates representing genes in a hypothetical genome. This dataset is intended for annotating the peaks in the testPeaks object. This object was imported from the BED file at inst/extdata/testGenes.bed using importBED.

testGenes

A dataframe with 5 rows and 6 columns, representing the first 6 fields of a standard BED file. Note that unlike in BED format, where intervals are right-open, the base pair given in "End" is actually included in the feature. The 6 columns are:

Chr: The chromosome the gene is on.
Start: The left endpoint of the gene.
End: The right endpoint of the gene. Unlike standard BED format, this position is actually included in the gene.
Name: The name given to the gene.
Score: An arbitrary numeric value that can be given to different genes in BED format (e.g. quality scores).
Strand: The strand of the gene: + for forward strand, - for reverse strand, and . for no strand information, in which case PeakMapper treats this gene as being on the forward strand.