Man pages for fuscada2/PeakMapper
Flexible Mapping of Genomic Coordinates to Nearest Features
| checkBEDInput | Check formatting of user-supplied BED dataframes |
| checkMappingResultInput | Check formatting of user-supplied mapping result dataframes |
| createMatrices | Create matrices of peak locations before and after feature... |
| getBackgroundStyle | Return a background style for plotting functions |
| getDistanceToPeak | Calculate distance between peak and feature |
| getFeaturesForPeak | Find closest features to a single peak |
| getOverlapPercent | Return fraction of feature overlapped by peak |
| H3K27me3Peaks | Dataset of H3K27me3 peaks from C. elegans |
| H3K27me3PeaksSmall | Small sample of H3K27me3 peaks from C. elegans |
| importBED | Import BED files |
| mapPeaks | Map peaks to closest features |
| plotNumMappingsPerPeak | Visualize number of closest features to each peak |
| plotOverlapDistribution | Plot distribution of overlap proportions |
| plotPeakLocations | Plot locations of mapped peaks relative to start of closest... |
| plotPeakOrientations | Plot distribution of qualitative peak positions relative to... |
| runPeakMapperApp | Launch the Shiny app for running PeakMapper |
| testGenes | An example dataset of 5 genes |
| testPeaks | An example dataset of 5 peaks |
| WS263Genes | Dataset of protein-coding genes in C. elegans |
