LTMcook: Prepare the data for running LTMdish

In gangwug/LTMR: An in silico genome-wide screen for circadian clock strength

Prepare the data for running LTMdish

Description

This function calculates the correlation value between expression level and measures of clock strength, gene by gene. The input screen data is from LTMheat.

Usage

LTMcook(cookD, corMethod = "pearson", outFileSymbol = NULL, outDir = NULL)

Arguments

cookD	a data frame. The screen data from LTMheat.
corMethod	a character string. Select the correlation coefficient is to be used for the correlation test between expression level and measures of clock strength. It must be "pearson"(default), "kendall", or "spearman".
outFileSymbol	a character string. A prefix exists in the name of output file. Set it NULL(default) if prefer to return a data frame.
outDir	a character string. The name of directory used to store output file.

Value

a data fame

Examples

## please refer to the webpage of LTMR package

gangwug/LTMR documentation built on Dec. 30, 2022, 10:43 p.m.