LTMdish: Generate the LTM analysis result for the input expression...

In gangwug/LTMR: An in silico genome-wide screen for circadian clock strength

Generate the LTM analysis result for the input expression dataset

Description

This function calculates the LTM_abs value for each gene, which indicates the correlation between gene expression and clock strength.

Usage

LTMdish(
  dishL,
  targetMeasures = c("zmantel", "zncv"),
  onlyConsistentTrend = FALSE,
  fileName = NULL,
  outDir = NULL
)

Arguments

dishL	a list of data frame. Each data frame is from LTMcook output.
targetMeasures	a vector of character string. The target measures of clock strength used to calculate LTM_abs value for each gene.
onlyConsistentTrend	logical. Set TRUE will only keep those genes show consistent trend across targetMeasures.
fileName	a character string. The name of output file. Set it NULL(default) if prefer to return a data frame.
outDir	a character string. The name of directory used to store output file.

Value

a data fame

Examples

## please refer to the webpage of LTMR package

gangwug/LTMR documentation built on Dec. 30, 2022, 10:43 p.m.