plot_sampled_graph: Plot Graph of Sampled Network

In gavincotterill/modulr: Simulate Individual Movement Behaviors Underlying Modular Fission-Fusion Networks

Plot Graph of Sampled Network

Description

Takes a graph from sample_graph and plots it to match plot_simulated_graph. If optional seed is set to match across the two functions, node position is preserved.

Usage

plot_sampled_graph(
  g_obs,
  g,
  vertex.size = 40,
  mark.expand = 25,
  vertex.label = NA,
  vertex.label.cex = 1.5,
  title = "",
  seed = NULL
)

Arguments

g_obs	an igraph object output from sample_graph()
g	an igraph object output from simulate_graph() or graph_from_schedule()
vertex.size	node size in plot
mark.expand	padding of polygon denoting modules around nodes
vertex.label	label for graph vertices
vertex.label.cex	size for vertex labels
title	plot title
seed	optional integer value to set.seed() within function and preserve node layout when plotting sampled and simulated graphs

Value

a plot of the sampled graph

Examples

g <- simulate_graph(n_animals = 25,
                    n_groups = 4,
                    time_to_leave = 5,
                    time_to_return = 2,
                    travel_time = c(0.001, 0.2),
                    samples_per_day = 1,
                    sampling_duration = 7)

g_obs <- sample_graph(
  graph = g,
  sample_nNodes = 13,
  prop_hi_res = 1,
  hi_res = 2,
  regime = "grab-two",
  alg = "fast_greedy",
  sampling_duration = 7)

plot_sampled_graph(g_obs, g)

gavincotterill/modulr documentation built on Nov. 30, 2022, 11:15 p.m.